Funny thing is, even with the IT, the story still has no ending. You stopped an indoctrination attempt. What then? Beating them mentally still leaves their physical form to defeat. So you got halfdead Shepard in the rubble with Reapers still there. Were they raped by the fleet? You don't know. So whatever you believe the ending is still utter shit. And of course the Joker scene, which is utter bullshit for any theory you want the ending to be.
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